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Search Rice Array Database Experiments



Number of experiments in database: 68
Number of samples in database: 1378

Click on a experiment's Title to view more information about the experiment. Click on a column header to sort results by that column.

  ID Platform Title Contributor Samples
1. GSE4438 Affymetrix Expression data from rice under salinity stress Close T,Walia H 24
2. GSE4471 Affymetrix Rice varieties Azucena and Bala grown in 0 and 1ppm arsenate Norton G,Nigar M,Williams P,Dasgupta T,Meharg A,Price AH 12
3. GSE5167 Affymetrix Rice seedling hormone treatment Jain M,Tyagi AK,Khurana JP 6
4. GSE6737 Affymetrix Cytokinin treatment and OsRR6-overexpression 28
5. GSE6893 Affymetrix Expression data for reproductive development in rice Kapoor S,Tyagi AK,Khurana JP,Arora R,Agarwal P,Nijhawan A,Sharma P,Jain M 45
6. GSE6901 Affymetrix Expression data for stress treatment in rice seedlings Tyagi AK,Kapoor S,Khurana JP,Ray S 12
7. GSE6908 Affymetrix Transcript Profiling of the Aerobic and Anoxic Rice Coleoptile Lasanthi-Kudahettige R,Magneschi L,Loreti E,Gonzali S,Licausi F,Novi G,Alpi A,Perata P 4
8. GSE7197 Affymetrix Rice OsSRT1 RNAi transgenic line Huang L,Sun Q,Qin F,Li C,Zhao Y,Zhou D 6
9. GSE7256 Affymetrix Virulent infection by Magnaporthe grisea Balzergue S,Morel J,Martin-Magniette ML 8
10. GSE7951 Affymetrix Genome-wide gene expression profiling of rice stigma Li M,Xu W,Yang W,Kong Z,Xue Y 13
11. GSE8380 Affymetrix Expression Profiling of Plants Overexpressing OsWRKY13 Qiu D,Xiao J,Xie W,Liu H,Li X,Xiong L,Wang S 9
12. GSE9498 Affymetrix Wild type Zhonghua11 and mutant gif1 in filling stage Li Q,Wang E,He Z 6
13. GSE10054 Affymetrix Splicing factor OsSKIPa knock-down and overexpressed rice Hou X,Xie K,Yao J,Qi Z,Xiong L 6
14. GSE10373 Affymetrix Rice susceptible and resistant cultivars with the parasitic plant Striga hermonthica Scholes JD,Swarbrick PJ,Huang K,Slate J,Press MC 24
15. GSE10857 Affymetrix Rice root tips before, at and buckled by a hard layer in two rice varieties Norton GJ,Price AH 12
16. GSE10872 Affymetrix Analysis of RILs of SA0420 rice mutant line Su H,Leu W,Tsai C,Li W,Tseng Y,Tseng T,Wang C 2
17. GSE11025 Affymetrix Two contrasting rice genotypes in response to rice stripe virus infection Zhang X,Wu Z,Xie L,Lin Q,Xie L 12
18. GSE11175 Affymetrix Comparison of transcriptome profile between wild-type and dst mutant plants Lin H,Huang X,Chao D 6
19. GSE11966 Affymetrix Expression data from rice embryo,endosperm,root,leaf and seedling Xue H,Xue L,Zhang J 10
20. GSE12069 Affymetrix Comparison of transgenic and mutant rice lines Batista R,Saibo N,Louren?¡ìo T,Oliveira MM 14
21. GSE12097 Affymetrix antiOsLIC collar chip Wang L,Yan H,Chong K 2
22. GSE14275 Affymetrix Expression data for heat shock in rice seedlings Hu W,Hu G,Han B 6
23. GSE14403 Affymetrix Contrasting rice genotypes in response to salinity stress Cotsaftis O,Plett D,Johnson AA,Close TJ,Tester M,Baumann U,Walia H,Wilson C 23
24. GSE15046 Affymetrix Transcriptome analysis of gibberellin-signaling mutants in rice Sakakibara H,Kamada-Nobusada T,Ueguchi-Tanaka M,Matsuoka M 12
25. GSE15071 Affymetrix Detection of genomic deletions in rice deletion mutants Bruce M,Leach J,Mauleon R 17
26. GSE15448 Affymetrix codA-expressing transgenic indica rice Giri J,Tyagi AK 9
27. GSE16265 Affymetrix Nipponbare and 9311 young panicle 2cm Horiuchi Y,Harushima Y,Kurata N 10
28. GSE16793 Affymetrix Rice undergoing infection by X. oryzae pv. oryzae or by X. oryzae pv. oryzicola Ni?¡Ào-Liu DO 60
29. GSE17194 Affymetrix Indica cultivar Zhongxian 3037 and mutant phoenix (pho) panicle Xu W,Wang K,Xue Y,Cheng Z 4
30. GSE17245 Affymetrix Transcriptome analysis of iron and phosphorus interaction in rice seedlings Zheng L,Huang F,Narsai R,Wu J,Giraud E,He F,Cheng L,Wang F,Wu P,Whelan J,Shou H 16
31. GSE18361 Affymetrix Rice root infected with Magnaporthe oryzae strain Guy11 Marcel S,Sawers R,Oakeley E,Angliker H,Paszkowski U 12
32. E-MEXP-1766 Affymetrix The first 24 hours of germination in rice grown under aerobic conditions 15
33. E-MEXP-2267 Affymetrix Rice germination under anaerobic conditions, aerobic to anaerobic switch and reverse 36
34. OS4 Affymetrix Rice cultivars IRBB7, IRBB5 and IR24 undergoing infection by X. oryzae pv. oryzae 45
35. GSE8216 Affymetrix Cellulase induced hypersensitive reaction like response in rice Jha G,Patel HK,Ramesh P,Sonti RV 6
36. GSE14647 Affymetrix Leaf blades of the rice Os-LBD37 overexpressor line RK16331-13 6
37. GSE17169 Affymetrix bulked RILs with high and low grain number per panicle Deshmukh RK,Singh A,Jain N,Gacche RN,Singh AK,gaikwad K,Sharma TR,Mohapatra T,Singh NK 4
38. GSE19024 Affymetrix Dissecting the developmental transcriptomes of rice Wang L,Xie W,Chen Y,Tang W,Yang J,Ye R,Liu L,Xu C,Lin Y,Xiao J,Zhang Q 190
39. GSE19239 Affymetrix Transgenic rice line carrying the maize resistance gene Rxo1 to Xoc Zhou Y,Xu M,Zhao M,Xie X,Zhu L,Fu B,Li Z 12
40. E-MEXP-2506 Affymetrix Rice plants grown in different light and temperature cycles 78
41. GSE18930 Affymetrix Aerial tissue of submergence tolerant M202(Sub1) and intolerant M202 Fukao T,Bailey-Serres J 8
42. GSE4645 Agilent22K The function of CEBiP in the chitin elicitor signaling in rice cells Kaku H,Yoko N,Ishii-Minami N,Akimoto-Tomiyama C,Minami E,Shibuya N 4
43. GSE5906 Agilent22K Bacterial lipopolysaccharides induce defense responses 4
44. GSE6124 Agilent22K Virus-susceptible and -resistant rice lines (TW16-4 and -69) Satoh K,DeLeon T,Kwak D 6
45. GSE6125 Agilent22K Virus-susceptible and -resistant rice lines (TW16-1263 and -1029) Satoh K,DeLeon T,Kwak D 6
46. GSE6126 Agilent22K Virus-susceptible and -resistant rice lines (NIL37 and NIL22) Satoh K,Kwak D,Lee B 4
47. GSE6244 Agilent22K Indica rice cultivar IET8585 (Ajaya) infected with Xoo Kottapalli K,Rakwal R,Satoh K,Kikuchi S 6
48. GSE6362 Agilent22K Indica rice cultivar FR13A under submergence treatment Kottapalli KR,Satoh K,Rakwal R,Shibato J,Doi K,Nagata T,Kikuchi S 6
49. GSE6600 Agilent22K Indica rice cultivar FR13A under salt stress condition Kottapalli KR,Kikuchi S 6
50. GSE8518 Agilent22K Biotrophic Invasion by Magnaporthe oryzae Mosquera G,Coughlan S,Valent B 12
51. GSE8811 Agilent22K Rice plants infested with planthoppers Satoh M,Gomi K,Ohashi Y,Takabayashi J 6
52. GSE9765 Agilent22K Rice plants irradiated with carbon ion beams (HIMAC) Rakwal R,Shibato J,Nojima K,Kim Y,Nahm B,Jwa N,Endo S,Tanaka K,Iwahashi H 2
53. GSE10098 Agilent22K Identification of downstream genes regulated by RFL Rao NN,Prasad K,Ravikumar P,Vijayraghavan U 4
54. GSE11157 Agilent22K Rice plants fumigated with ozone Rakwal R 12
55. GSE11158 Agilent22K Rice plants exposed to jasmonic acid (JA) Rakwal R 2
56. GSE14606 Agilent22K Rice infected with rice tungro spherical virus (RTSV) Satoh K,Kondoh H,Kimura S,De Leon T,Kikuchi S 4
57. E-MEXP-1065 Agilent22K Overexpress OsNAC6 under normal growth condition 4
58. E-MEXP-1066 Agilent22K Overexpress OsNAC6-GR after the DEX treatment 4
59. GSE6187 Agilent22K Nipponbare and 6-4 under two conditions Tanaka J,Maruyama K,Satoh K 6
60. GSE6533 BGIYale Drought and High-salinity Stresses-responsive Genes Zhou J,Wang X,Deng X 63
61. GSE6552 BGIYale Transcriptome associates with rice organogenesis Su N,He K,Jiao Y,Deng X 8
62. GSE11712 BGIYale Gene expression level of six rice lineages 12
63. GSE13161 BGIYale A transcriptome atlas of rice cell types Jiao Y,Tausta L,Gandotra N,Sun N,Clay NK,Liu T,Ceserani T,Chen M,Ma L,Holford M,Zhao H,Deng X,Nelson T 168
64. GSE9653 NSF20K Dissect Rice Defense Response Pathways Wang G,Ronald P,Leach J,Jung KH,Park CH 114
65. E-MEXP-1773 NSF20K Rice plants overexpressing OsGH3.1 6
66. GSE8261 NSF45K A Functional Survey of Light-Responsive Genes Jung KH 8
67. GSE11896 NSF45K Global Transcriptome Profiles in the Nodes of Rice Schnable PS 67
68. GSE16796 NSF45K Analysis of PHOTOPERIOD SENSITIVITY5 in Rice Andres F,Galbraith DW,Talon M,Domingo C 4


Available Data:
Platforms: 5
Experiments: 68
Hybridations: 1378


UC Davis

JBEI

DOE