Rice Array Database

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Experiment ID	GSE10373
Experiment Title	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
Number of Samples	24
Organism(s)	Oryza sativa;Oryza sativa Japonica Group
Summary	Using rice cultivars Nipponbare, which exhibits resistance to Striga hermonthica (a root parasitic plant that causes devastating loss of yield), and IAC165, which is susceptible, we aim to identify suites of genes underlying susceptibility and resistance to S. hermonthica by profiling changes in gene expression using rice whole genome microarrays. In addition to a functional categorisation of changes in gene expression, genes that were significantly differentially regulated within regions predicted to contain Nipponbare quantitative trait loci for resistance were identified. Keywords: Infected material vs. comparable control tissue, time course
Overall design	Root tissue was harvested from two cultivars of rice that had been infected with Striga hermonthica (or from uninfected control tissue). Three timepoints were used (2, 4 and 11 days after infection or mock-inoculation) using two replicate chips per treatment/timepoint.
Contributor(s)	Scholes JD,Swarbrick PJ,Huang K,Slate J,Press MC
Citation(s)	19086183

Submission date	4-Feb-08
Contact name	Julie Scholes
E-mail(s)
Phone
Fax
URL
Organization name	University of Sheffield
Department	Animal and Plant Sciences
Lab
Street address	Western Bank
City	Sheffield
State/province
ZIP/Postal code	S10 2TN
Country	UK

	ID	Platform	Sample Name
1.	GSM261998	Affymetrix	IAC165, 2 days after mock-infection, biological replicate #1
2.	GSM261999	Affymetrix	IAC165, 2 days after mock-infection, biological replicate #2
3.	GSM262000	Affymetrix	IAC165, 2 days after infection with S. hermonthica, biological replicate #1
4.	GSM262001	Affymetrix	IAC165, 2 days after infection with S. hermonthica, biological replicate #2
5.	GSM262002	Affymetrix	IAC165, 4 days after mock-infection, biological replicate #1
6.	GSM262003	Affymetrix	IAC165, 4 days after mock-infection, biological replicate #2
7.	GSM262004	Affymetrix	IAC165, 4 days after infection with S. hermonthica, biological replicate #1
8.	GSM262005	Affymetrix	IAC165, 4 days after infection with S. hermonthica, biological replicate #2
9.	GSM262006	Affymetrix	IAC165, 11 days after mock-infection, biological replicate #1
10.	GSM262007	Affymetrix	IAC165, 11 days after mock-infection, biological replicate #2
11.	GSM262008	Affymetrix	IAC165, 11 days after infection with S. hermonthica, biological replicate #1
12.	GSM262009	Affymetrix	IAC165, 11 days after infection with S. hermonthica, biological replicate #2
13.	GSM262010	Affymetrix	Nipponbare, 2 days after mock-infection, biological replicate #1
14.	GSM262011	Affymetrix	Nipponbare, 2 days after mock-infection, biological replicate #2
15.	GSM262012	Affymetrix	Nipponbare, 2 days after infection with S. hermonthica, biological replicate #1
16.	GSM262013	Affymetrix	Nipponbare, 2 days after infection with S. hermonthica, biological replicate #2
17.	GSM262014	Affymetrix	Nipponbare, 4 days after mock-infection, biological replicate #1
18.	GSM262015	Affymetrix	Nipponbare, 4 days after mock-infection, biological replicate #2
19.	GSM262016	Affymetrix	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #1
20.	GSM262017	Affymetrix	Nipponbare, 4 days after infection with S. hermonthica, biological replicate #2
21.	GSM262018	Affymetrix	Nipponbare, 11 days after mock-infection, biological replicate #1
22.	GSM262019	Affymetrix	Nipponbare, 11 days after mock-infection, biological replicate #2
23.	GSM262020	Affymetrix	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #1
24.	GSM262021	Affymetrix	Nipponbare, 11 days after infection with S. hermonthica, biological replicate #2