Rice Coexpression Analysis
The correlation coefficient of two genes is calculated based on 830 rice Affymetrix microarray data (NCBI GEO AC: GPL2025). On the rice whole genome scale, there are 37,993 genes which have Affymetrix probeset matched, of which 34,016 have unique Affymetrix probeset available and only these genes were included in this database. So total 578,527,120 correlation coefficients for every pair of selected genes were obtained, and of which 13,466,025 (2.33%) have absolute values bigger than 0.5. These correlation coefficients are the base of this database. The following figure shows the correlation coefficient distribution on the whole genome scale and the interval is 0.01.
Last modified: Thursday, 25-Feb-2010 17:06:08 Pacific Standard Time
| Available Data: |
| Platforms: 5 |
| Experiments: 68 |
| Hybridations: 1378 |
